1. Winangali Pty Ltd 2024, Caring for Sea Country - Traditional Owner Stories from the Great Barrier Reef, Great Barrier Reef Marine Park Authority, Townsville.
2. Australian Government and Queensland Government 2023, Reef 2050 Long-Term Sustainability Plan 2021-2025, Department of Agriculture, Water and the Environment, Canberra.
3. Great Barrier Reef Marine Park Authority 2009, Great Barrier Reef Outlook Report 2009, Great Barrier Reef Marine Park Authority, Townsville.
4. Great Barrier Reef Marine Park Authority 2014, Great Barrier Reef Outlook Report 2014, Great Barrier Reef Marine Park Authority, Townsville.
5. Great Barrier Reef Marine Park Authority 2019, Great Barrier Reef Outlook Report 2019, Great Barrier Reef Marine Park Authority, Townsville.
6. Great Barrier Reef Marine Park Act 1975, Commonwealth of Australia.
7. Department of Environment and Energy 2004, Great Barrier Reef (Declaration of Amalgamated Marine Park Area) Proclamation 2004, Commonwealth of Australia.
8. Masterson, V.A., Vetter, S., Chaigneau, T., Daw, T.M., Selomane, O., et al. 2019, Revisiting the relationships between human well-being and ecosystems in dynamic social-ecological systems: Implications for stewardship and development, Global Sustainability 2: e8.
10. Cresswell, I.D., Janke, T. and Johnston, E.L. 2021, Australia state of the environment 2021: overview, independent report to the Australian Government Minister for the Environment, Commonwealth of Australia, Canberra, Department of Agriculture, Water and the Environment, Canberra.
11. Baker, I., Peterson, A., Tobin, L., Toki, B. and Visser, J. 2024, Independent assessment of management effectiveness for the Great Barrier Reef Outlook Report 2024, Great Barrier Reef Marine Park Authority, Townsville.
12. Boxshall, A. and Torok, S. 2024, The Rapid Assessment Workshops to elicit expert input to inform the development of the Great Barrier Reef Outlook Report 2024, Great Barrier Reef Marine Park Authority, Townsville.
13. Citation number not used.
14. Taxonomy Decadal Plan Working Group 2018, Discovering biodiversity: A decadal plan for taxonomy and biosystematics in Australia and New Zealand 2018-2027, Australian Academy of Science and Royal Society Te Apārangi, Canberra and Wellington.
15. Ditchfield, K., Ulm, S., Manne, T., Farr, H., O'Grady, D., et al. 2022, Framing Australian Pleistocene coastal occupation and archaeology, Quaternary Science Reviews 293: 107706.
16. Benjamin, J. and Ulm, S. 2021, The big flood: responding to sea-level rise and the inundated continental shelf, in The Oxford Handbook of the Archaeology of Indigenous Australia and New Guinea, eds I.J. McNiven and B. David, Oxford University Press, New York, pp. 541-558.
17. Richards, Z. T., Day, J.C. 2018, Biodiversity of the Great Barrier Reef—how adequately is it protected? PeerJ 6: 1-26.
18. Appeltans, W., Ahyong, S.T., Anderson, G., Angel, M.V., Artois, T., et al. 2012, The magnitude of global marine species diversity, Current Biology 22(23): 2189-2202.
19. Ip, Y.C.A., Tay, Y.C., Gan, S.X., Ang, H.P., Tun, K., et al. 2019, From marine park to future genomic observatory? Enhancing marine biodiversity assessments using a biocode approach, Biodiversity Data Journal 7: e46833.
20. Dougan, K.E., González-Pech, R.A., Stephens, T.G., Ragan, M.A., Bhattacharya, D., et al. 2022, Genome-powered classification of microbial eukaryotes: focus on coral algal symbionts, Trends in Microbiology 30(9): 831-840.
21. Matias, A.M.A., Popovic, I., Thia, J.A., Cooke, I.R., Torda, G., et al. 2023, Cryptic diversity and spatial genetic variation in the coral Acropora tenuis and its endosymbionts across the Great Barrier Reef, Evolutionary Applications 16(2): 293-310.
22. Cowman, P.F., Quattrini, A.M., Bridge, T.C.L., Watkins-Colwell, G.J., Fadli, N., et al. 2020, An enhanced target-enrichment bait set for Hexacorallia provides phylogenomic resolution of the staghorn corals (Acroporidae) and close relatives, Molecular Phylogenetics and Evolution 153: 106944.
23. Beng, K.C. and Corlett, R.T. 2020, Applications of environmental DNA (eDNA) in ecology and conservation: opportunities, challenges and prospects, Biodiversity and Conservation 29: 2089-2121.
25. Bowers, H.A., Pochon, X., von Ammon, U., Gemmell, N., Stanton, J.L., et al. 2021, Towards the optimization of eDNA/eRNA sampling technologies for marine biosecurity surveillance, Water 13(8): 1113.
26. Yasashimoto, T., Sakata, M.K., Sakita, T., Nakajima, S., Ozaki, M., et al., 2021, Environmental DNA detection of an invasive ant species (Linepithema humile) from soil samples, Scientific Reports 11(10712).
27. Stauffer, S., Jucker, M., Keggin, T., Marques, V., Andrello, M., et al. 2021, How many replicates to accurately estimate fish biodiversity using environmental DNA on coral reefs? Ecology and Evolution 11(21): 14630-14643.
28. Cziesielski, M.J., Schmidt‐Roach, S. and Aranda, M. 2019, The past, present, and future of coral heat stress studies, Ecology and Evolution 9(17): 10055-10066.
29. Pinsky, M.L., Clark, R.D. and Bos, J.T. 2023, Coral reef population genomics in an age of global change, Annual Review of Genetics 57: 87-115.
30. Howells, E.J., Bay, L.K. and Bay, R.A. 2022, Identifying, monitoring, and managing adaptive genetic variation in reef-building corals under rapid climate warming, in Coral reef conservation and restoration in the omics age, eds M.J.H. van Oppen and M.A. Lastra, Springer, Florida, pp. 55-70.
31. Fuller, Z.L., Mocellin, V.J., Morris, L.A., Cantin, N., Shepherd, J., et al. 2020, Population genetics of the coral Acropora millepora: Toward genomic prediction of bleaching, Science 369(6501): eaba4674
32. McLeod, I.M., Hein, M.Y., Babcock, R., Bay, L., Bourne, D.G., et al. 2022, Coral restoration and adaptation in Australia: the first five years, PLoS One 17(11): e0273325.
33. Department of Environment and Science, 2019, Queensland Intertidal and Subtidal Ecosystem Classification Scheme version 1.0, Module 2 - Literature review of intertidal and subtidal classification frameworks and systems: informing the development of the Queensland Intertidal and Subtidal Ecosystem Classification Scheme, Queensland Wetlands Program: Queensland Government, Brisbane.
34. Wolfe, K., Kenyon, T.M., Desbiens, A., de la Motte, K. and Mumby, P.J. 2023, Hierarchical drivers of cryptic biodiversity on coral reefs, Ecological Monographs: 27
35. Bejder, M., Johnson, D.W., Smith, J., Friedlaender, A. and Bejder, L. 2016, Embracing conservation success of recovering humpback whale populations: evaluating the case for downlisting their conservation status in Australia, Marine Policy 66: 137-141.
36. Queensland Museum 2022, Wetlands of Queensland: Queensland Museum discovery guide/published in partnership with the Department of Environment and Science, South Brisbane.
37. Duarte, C.M., Agusti, S., Barbier, E., Britten, G.L., Castilla, J.C., et al. 2020, Rebuilding marine life, Nature 580(7801): 39-51.
38. Great Barrier Reef Marine Park Authority and Queensland Government 2022, Reef Joint Field Management Program: Annual report summary 2021-2022, Great Barrier Reef Marine Park Authority, Townsville.
39. Collier, C., Brown, A., Fabricius, K., Lewis, S., Diaz-Pulido, G. et al. 2024, 2022 Scientific Consensus Statement: Summary | Evidence Statement for Question 3.2: What are the measured impacts of increased sediment and particulate nutrient loads on GBR ecosystems, what are the mechanism(s) for those impacts and where is there evidence of this occurring in the GBR? in 2022 Scientific Consensus Statement on land-based impacts on Great Barrier Reef water quality and ecosystem condition, eds J. Waterhouse, M. Pineda and K. Sambrook, Commonwealth of Australia and Queensland Government.
40. McCloskey, G.L., Baheerathan, R., Dougall, C., Ellis, R., Bennett, F.R., et al. 2021, Modelled estimates of fine sediment and particulate nutrients delivered from the Great Barrier Reef catchments, Marine Pollution Bulletin 165: 112163.
41. McCulloch, M., Fallon, S., Wyndham, T., Hendy, E., Lough, J., et al. 2003, Coral record of increased sediment flux to the inner Great Barrier Reef since European settlement, Nature 421(6924): 727-730.
42. Waterhouse, J., Pineda, M., Sambrook, K., Newlands, M., McKenzie, L., et al. 2024, 2022 Scientific Consensus Statement: Conclusions, in 2022 Scientific Consensus Statement on land-based impacts on Great Barrier Reef water quality and ecosystem condition, eds J. Waterhouse, M. Pineda and K. Sambrook, Commonwealth of Australia and Queensland Government.
43. Hughes, T.P., Barnes, M.L., Bellwood, D.R., Cinner, J.E., Cumming, G.S., et al. 2017, Coral reefs in the Anthropocene, Nature 546(7656): 82-90.
44. Bird, M.I., Hutley, L.B., Lawes, M.J., Lloyd, J., Luly, J.G., et al. 2013, Humans, megafauna and environmental change in tropical Australia, Journal of Quaternary Science 28(5): 439-452.
45. Kelly, L.T., Giljohann, K.M., Duane, A., Aquilué, N., Archibald, S., et al. 2020, Fire and biodiversity in the Anthropocene, Science 370(6519): eabb0355.
46. Owens, P.N. 2020, Soil erosion and sediment dynamics in the Anthropocene: a review of human impacts during a period of rapid global environmental change, Journal of Soils and Sediments 20: 4115-4143.
47. Finn, C., Grattarola, F. and Pincheira‐Donoso, D. 2023, More losers than winners: investigating Anthropocene defaunation through the diversity of population trends, Biological Reviews 98(5): 1732-1748.
48. Hoegh-Guldberg, O., Pendleton, L. and Kaup, A. 2019, People and the changing nature of coral reefs, Regional Studies in Marine Science 30: 100699.
49. Roff, G., Brown, C.J., Priest, M.A. and Mumby, P.J. 2018, Decline of coastal apex shark populations over the past half century, Communications Biology 1(1): 223.
50. Pauly, D. 1995, Anecdotes and the shifting baseline syndrome of fisheries, Trends in Ecology & Evolution 10(10): 430.