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  • 751. Pisapia, C., Hochberg, E.J. and Carpenter, R. 2019, Multi-decadal change in reef-scale production and calcification associated with recent disturbances on a Lizard Island reef flat, Frontiers in Marine Science 6(575): 1-10.
  • 752. Razak, T.B., Roff, G., Lough, J.M. and Mumby, P.J. 2020, Growth responses of branching versus massive corals to ocean warming on the Great Barrier Reef, Australia, Science of the Total Environment 705: 135908.
  • 753. Mollica, N.R., Guo, W., Cohen, A.L., Huang, K., Foster, G.L., et al. 2018, Ocean acidification affects coral growth by reducing skeletal density, Proceedings of the National Academy of Sciences 115(8): 1754-1759.
  • 754. Razak, T.B., Roff, G., Lough, J.M., Prayudi, D., Cantin, N.E., et al. 2019, Long-term growth trends of massive Porites corals across a latitudinal gradient in the Indo-Pacific, Marine Ecology Progress Series 626: 69-82.
  • 755. Kang, H., Chen, X., Deng, W., Wang, X., Cui, H., et al. 2021, Skeletal Growth Response of Porites Coral to Long-Term Ocean Warming and Acidification in the South China Sea, Journal of Geophysical Research: Biogeosciences 126(10): e2021JG006423.
  • 756. Guo, W., Bokade, R., Cohen, A.L., Mollica, N.R., Leung, M., et al. 2020, Ocean acidification has impacted coral growth on the Great Barrier Reef, Geophysical Research Letters 47(19): e2019GL086761.
  • 757. Wolfe, K., Deaker, D.J., Graba-Landry, A., Champion, C., Dove, S., et al. 2021, Current and future trophic interactions in tropical shallow-reef lagoon habitats, Coral Reefs 40: 83-96.
  • 758. Cyronak, T. and Eyre, B.D. 2016, The synergistic effects of ocean acidification and organic metabolism on calcium carbonate (CaCO3) dissolution in coral reef sediments, Marine Chemistry 183: 1-12.
  • 759. Wolfe, K., Vidal‐Ramirez, F., Dove, S., Deaker, D. and Byrne, M. 2018, Altered sediment biota and lagoon habitat carbonate dynamics due to sea cucumber bioturbation in a high‐pCO2 environment, Global Change Biology 24(1): 465-480.
  • 760. Cornwall, C.E., Comeau, S., Kornder, N.A., Perry, C.T., van Hooidonk, R., et al. 2021, Global declines in coral reef calcium carbonate production under ocean acidification and warming, Proceedings of the National Academy of Sciences 118(21): e2015265118.
  • 761. Durack, P.J. 2015, Ocean salinity and the global water cycle, Oceanography 28(1): 20-31.
  • 762. Durack, P.J., Wijffels, S.E. and Matear, R.J. 2012, Ocean salinities reveal strong global water cycle intensification during 1950 to 2000, Science 336(6080): 455-458.
  • 763. Dyez, K., Cole, J.E. and Lough, J. 2020, Northern Great Barrier Reef coral documents seasonal ocean temperature, salinity, productivity and runoff from the last 250 years, in American Geophyical Union Fall Meeting Abstracts, eds. Anonymous, pp. PP030-0010.
  • 764. Smyth, K. and Elliott, M. 2016, Effects of changing salinity on the ecology of the marine environment, in Stressors in the marine environment: physiological and ecological responses; societal implications, eds M. Solan and N.M. Whiteley, Oxford University Press Oxford, UK, pp. 161-174.
  • 765. Röthig, T., Trevathan‐Tackett, S.M., Voolstra, C.R., Ross, C., Chaffron, S., et al. 2023, Human‐induced salinity changes impact marine organisms and ecosystems, Global Change Biology 29(17): 4731-4749.
  • 766. Parikh, A.C., Pansu, J., Stow, A., Warne, M.S.J., Chivas, C., et al. Environmental DNA highlights the influence of salinity and agricultural run-off on coastal fish assemblages in the Great Barrier Reef region, Environmental Pollution 349.
  • 767. Collier, C.J., Villacorta-Rath, C., van Dijk, K., Takahashi, M. and Waycott, M. 2014, Seagrass proliferation precedes mortality during hypo-salinity events: a stress-induced morphometric response, PloS One 9(4): e94014.
  • 768. Clements, M., Selvakumaraswamy, P., Deaker, D. and Byrne, M. 2022, Freshening of Great Barrier Reef waters is deleterious for larval crown-of-thorns starfish, counter to the terrestrial runoff hypothesis, Marine Ecology Progress Series 696: 1-14.
  • 769. Aguilar, C., Raina, J., Fôret, S., Hayward, D.C., Lapeyre, B., et al. 2019, Transcriptomic analysis reveals protein homeostasis breakdown in the coral Acropora millepora during hypo-saline stress, BMC Genomics 20(1): 1-13.
  • 770. Gegner, H.M., Rädecker, N., Ochsenkühn, M., Barreto, M.M., Ziegler, M., et al. 2019, High levels of floridoside at high salinity link osmoadaptation with bleaching susceptibility in the cnidarian-algal endosymbiosis, Biology Open 8(12): bio045591.
  • 771. Gruber, R., Waterhouse, J., Logan, M., Petus, C., Howley, C., et al. 2020, Marine Monitoring Program: a annual report for inshore water quality monitoring 2018-19, Great Barrier Reef Marine Park Authority, Townsville.
  • 772. Wolfe, K., Anthony, K., Babcock, R.C., Bay, L., Bourne, D., et al. 2019, Recommendations to maintain functioning of the Great Barrier Reef, Reef and Rainforest Research Centre Limited, Cairns.
  • 773. Glasl, B., Robbins, S., Frade, P.R., Marangon, E., Laffy, P.W., et al. 2020, Comparative genome-centric analysis reveals seasonal variation in the function of coral reef microbiomes, The ISME Journal 14(6): 1435-1450.
  • 774. Silveira, C.B., Cavalcanti, G.S., Walter, J.M., Silva-Lima, A.W., Dinsdale, E.A., et al. 2017, Microbial processes driving coral reef organic carbon flow, FEMS Microbiology Reviews 41(4): 575-595.
  • 775. Salas-Saavedra, M., Webb, G.E., Sanborn, K.L., Zhao, J., Webster, J.M., et al. 2022, Holocene microbialite geochemistry records > 6000 years of secular influence of terrigenous flux on water quality for the southern Great Barrier Reef, Chemical Geology 604: 120871.
  • 776. Szilagyi, Z., Webster, J.M., Patterson, M.A., Hips, K., Riding, R., et al. 2020, Controls on the spatio-temporal distribution of microbialite crusts on the Great Barrier Reef over the past 30,000 years, Marine Geology 429: 106312.
  • 777. Voolstra, C.R., Raina, J., Dörr, M., Cárdenas, A., Pogoreutz, C., et al. 2024, The coral microbiome in sickness, in health and in a changing world, Nature Reviews Microbiology: 1-16.
  • 778. Glasl, B., Bourne, D.G., Frade, P.R., Thomas, T., Schaffelke, B., et al. 2019, Microbial indicators of environmental perturbations in coral reef ecosystems, Microbiome 7(1): 1-13.
  • 779. Hernandez-Agreda, A., Leggat, W. and Ainsworth, T.D. 2019, A place for taxonomic profiling in the study of the coral prokaryotic microbiome, FEMS Microbiology Letters 366(6): fnz063.
  • 780. Gardner, S.G., Camp, E.F., Smith, D.J., Kahlke, T., Osman, E.O., et al. 2019, Coral microbiome diversity reflects mass coral bleaching susceptibility during the 2016 El Niño heat wave, Ecology and Evolution 9(3): 938-956.
  • 781. Williams, J., Pettorelli, N., Hartmann, A.C., Quinn, R.A., Plaisance, L., et al. 2024, Decline of a distinct coral reef holobiont community under ocean acidification, Microbiome 12(1): 75.
  • 782. Haas, A.F., Fairoz, M.F.M., Kelly, L.W., Nelson, C.E., Dinsdale, E.A., et al. 2016, Global microbialization of coral reefs, Nature Microbiology 1: 16042.
  • 783. Ambalavanan, L., Iehata, S., Fletcher, R., Stevens, E.H. and Zainathan, S.C. 2021, A review of marine viruses in coral ecosystem, Journal of Marine Science and Engineering 9(7): 711.
  • 784. Wright, R.J., Erni-Cassola, G., Zadjelovic, V., Latva, M. and Christie-Oleza, J.A. 2020, Marine plastic debris: a new surface for microbial colonization, Environmental Science & Technology 54(19): 11657-11672.
  • 785. The Global Ocean Observing System 2023, Essential Ocean Variables, <https://www.goosocean.org/index.php?option=com_content&view=article&id=283&Itemid=441>.
  • 786. IMOS (Integrated Marine Observing System) 2023, Great Barrier Reef Genomic Database, Australian Institute of Marine Science, <https://imos.org.au/facilities/marinemicrobiomeinitiative/gbr-microbial-genomic-database>.
  • 787. Hamann, L. and Blanke, A. 2022, Suspension feeders: diversity, principles of particle separation and biomimetic potential, Journal of the Royal Society Interface 19(186): 20210741.
  • 788. Jeunen, G., Cane, J.S., Ferreira, S., Strano, F., von Ammon, U., et al. 2023, Assessing the utility of marine filter feeders for environmental DNA (eDNA) biodiversity monitoring, Molecular Ecology Resources 23(4): 771-786.
  • 789. Williamson, J.E., Duce, S., Joyce, K.E. and Raoult, V. 2021, Putting sea cucumbers on the map: projected holothurian bioturbation rates on a coral reef scale, Coral Reefs 40: 559-569.
  • 790. Chen, E.Y. 2021, Often overlooked: understanding and meeting the current challenges of marine invertebrate conservation, Frontiers in Marine Science 8.
  • 791. O'Neill, M.F., Yang, W.H., Wortmann, J., Courtney, A.J., Leigh, G.M., et al. 2020, Stock predictions and population indicators for Australia's east coast saucer scallop fishery, Project Report No. 2017/057, FRDC, Brisbane.
  • 792. French, S.M., Courtney, A.J. and Yang, W. 2021, Quantitative analysis of the fishery-Independent queensland saucer scallop (Ylistrum balloti) trawl survey, Journal of Shellfish Research 40(2): 297-309.
  • 793. French, S.M. 2023, Stock Assessment of Ballot's saucer scallop (Ylistrum balloti) in Queensland, Australia, with data to October 2022, State of Queensland, Brisbane.
  • 794. Kangas, M. and Roelofs, A. 2021, Ballot's Saucer Scallop - Ylistrum balloti, in Status of Australian fish stocks reports 2020, eds T. Piddcocke, C. Ashby, K. Hartmann, A. Hesp, P. Hone, et al., Fisheries Research and Development Corporation, Canberra.
  • 795. Lesser, M.P. and Slattery, M. 2020, Will coral reef sponges be winners in the Anthropocene? Global Change Biology 26(6): 3202-3211.
  • 796. Dawson, A.L., Li, J.Y. and Kroon, F.J. 2022, Plastics for dinner: Store-bought seafood, but not wild-caught from the Great Barrier Reef, as a source of microplastics to human consumers, Environmental Advances 8: 100249.
  • 797. Zantis, L.J., Bosker, T., Lawler, F., Nelms, S.E., O'Rorke, R., et al. 2022, Assessing microplastic exposure of large marine filter-feeders, Science of the Total Environment 818: 151815.
  • 798. Fabra, M., Williams, L., Watts, J.E., Hale, M.S., Couceiro, F., et al. 2021, The plastic Trojan horse: biofilms increase microplastic uptake in marine filter feeders impacting microbial transfer and organism health, Science of the Total Environment 797: 149217.
  • 799. Gonçalves, C., Martins, M., Sobral, P., Costa, P.M. and Costa, M.H. 2019, An assessment of the ability to ingest and excrete microplastics by filter-feeders: a case study with the Mediterranean mussel, Environmental Pollution 245: 600-606.
  • 800. Wiedenmann, J., D’angelo, C., Mardones, M.L., Moore, S., Benkwitt, C.E., et al. 2023, Reef-building corals farm and feed on their photosynthetic symbionts, Nature 620(7976): 1018-1024.