All references

The list below contains all the information sources referenced in the report. 

Use the search box to find particular references quickly.

To clear the search filter and bring back the full list of references to view, delete any words in the search box and press return or the magnifying glass icon.

  • 851. Scott, A., Hoey, A. S. 2017, Severe consequences for anemonefishes and their host sea anemones during the 2016 bleaching event at Lizard Island, Great Barrier Reef, Coral Reefs 36: 873.
  • 852. Hobbs, J.A., Frisch, A.J., Ford, B.M., Thums, M., Saenz-Agudelo, P., et al. 2013, Taxonomic, spatial and temporal patterns of bleaching in anemones inhabited by anemonefishes, PloS One 8(8): e70966.
  • 853. Helgoe, J., Davy, S.K., Weis, V.M. and Rodriguez‐Lanetty, M. 2024, Triggers, cascades, and endpoints: connecting the dots of coral bleaching mechanisms, Biological Reviews.
  • 854. Rädecker, N., Pogoreutz, C., Gegner, H.M., Cárdenas, A., Roth, F., et al. 2021, Heat stress destabilizes symbiotic nutrient cycling in corals, Proceedings of the National Academy of Sciences 118(5): e2022653118.
  • 855. Fan, L., Liu, M., Simister, R., Webster, N.S. and Thomas, T. 2013, Marine microbial symbiosis heats up: Loss of interactions in a sponge holobiont under thermal stress, ISME Journal 7: 991-1002.
  • 856. Botté, E.S., Bennett, H., Engelberts, J.P., Thomas, T., Bell, J.J., et al. 2023, Future ocean conditions induce necrosis, microbial dysbiosis and nutrient cycling imbalance in the reef sponge Stylissa flabelliformis, ISME Communications 3(1): 53.
  • 857. Alderdice, R., Perna, G., Cárdenas, A., Hume, B.C.C., Wolf, M., et al. 2022, Deoxygenation lowers the thermal threshold of coral bleaching, Scientific Reports 12(1): 18273.
  • 858. Claar, D.C., Starko, S., Tietjen, K.L., Epstein, H.E., Cunning, R., et al. 2020, Dynamic symbioses reveal pathways to coral survival through prolonged heatwaves, Nature Communications 11(1): 6097.
  • 859. Prazeres, M., Roberts, T.E., Pandolfi, J.M. 2017, Variation in sensitivity of large benthic Foraminifera to the combined effects of ocean warming and local impacts, Scientific Reports 7(1): 45227.
  • 860. Prazeres, M., Uthicke, S. and Pandolfi, J.M. 2016, Influence of local habitat on the physiological responses of large benthic foraminifera to temperature and nutrient stress, Scientific Reports 6: 21936.
  • 861. Berkelmans, R. and van Oppen, M.J. 2006, The role of zooxanthellae in the thermal tolerance of corals: a ‘nugget of hope’for coral reefs in an era of climate change, Proceedings of the Royal Society B: Biological Sciences 273(1599): 2305-2312.
  • 862. Puntin, G., Craggs, J., Hayden, R., Engelhardt, K.E., McIlroy, S., et al. 2023, The reef-building coral Galaxea fascicularis: a new model system for coral symbiosis research, Coral Reefs 42(1): 239-252.
  • 863. Quigley, K.M., Willis, B.L. and Kenkel, C.D. 2019, Transgenerational inheritance of shuffled symbiont communities in the coral Montipora digitata, Scientific Reports 9(1): 13328.
  • 864. Pernice, M., Raina, J., Rädecker, N., Cárdenas, A., Pogoreutz, C., et al. 2020, Down to the bone: the role of overlooked endolithic microbiomes in reef coral health, The ISME Journal 14(2): 325-334.
  • 865. van Oppen, M.J. and Blackall, L.L. 2019, Coral microbiome dynamics, functions and design in a changing world, Nature Reviews Microbiology 17(9): 557-567.
  • 866. Prazeres, M., Ainsworth, T., Roberts, T.E., Pandolfi, J.M. and Leggat, W. 2017, Symbiosis and microbiome flexibility in calcifying benthic foraminifera of the Great Barrier Reef, Microbiome 5(1): 38-7.
  • 867. Webster, N.S. and Reusch, T.B.H. 2017, Microbial contributions to the persistence of coral reefs, The ISME Journal 11(10): 2167.
  • 868. Robbins, S.J., Singleton, C.M., Chan, C.X., Messer, L.F., Geers, A.U., et al. 2019, A genomic view of the reef-building coral Porites lutea and its microbial symbionts, Nature Microbiology 4(12): 2090-2100.
  • 869. Roughgarden, J., Gaines, S. and Possingham, H. 1988, Recruitment dynamics in complex life cycles, Science 241(4872): 1460-1466.
  • 870. Caley, M.J., Carr, M.H., Hixon, M.A., Hughes, T.P., Jones, G.P., et al. 1996, Recruitment and the local dynamics of open marine populations, Annual Review of Ecology and Systematics 27(1): 477-500.
  • 871. Edmunds, P.J. 2023, Coral recruitment: patterns and processes determining the dynamics of coral populations, Biological Reviews.
  • 872. Doll, P.C., Uthicke, S., Caballes, C.F., Diaz-Pulido, G., Abdul Wahab, M.A., et al. 2023, Settlement cue selectivity by larvae of the destructive crown-of-thorns starfish, Biology Letters 19(1): 20220399.
  • 873. Davidson, J., Thompson, A., Logan, M. and Schaffelke, B. 2019, High spatio-temporal variability in Acroporidae settlement to inshore reefs of the Great Barrier Reef, PloS One 14(1): e0209771.
  • 874. Tebbett, S.B., Morais, J. and Bellwood, D.R. 2022, Spatial patchiness in change, recruitment, and recovery on coral reefs at Lizard Island following consecutive bleaching events, Marine Environmental Research 173: 105537.
  • 875. Roper, C.D., Camp, E.F., Edmondson, J. and Suggett, D.J. 2022, Combined impacts of natural recruitment and active propagation for coral population recovery on the Great Barrier Reef, Marine Ecological Progress Series 700: 95-109.
  • 876. Hughes, T.P., Kerry, J.T., Baird, A.H., Connolly, S.R., Chase, T.J., et al. 2019, Global warming impairs stock–recruitment dynamics of corals, Nature 568(7752): 387-390.
  • 877. Caballes, C.F., Byrne, M., Messmer, V. and Pratchett, M.S. 2021, Temporal variability in gametogenesis and spawning patterns of crown-of-thorns starfish within the outbreak initiation zone in the northern Great Barrier Reef, Marine Biology 168(1): 13.
  • 878. Robinson, J.P.W., Wilson, S.K., Jennings, S. and Graham, N.A.J. 2019, Thermal stress induces persistently altered coral reef fish assemblages, Global Change Biology 25(8): 2739-2750.
  • 879. Blandford, M.I., Hillcoat, K.B., Pratchett, M.S. and Hoey, A.S. 2023, Effects of habitat fragmentation on the recruitment and early post-settlement survival of coral reef fishes, Marine Environmental Research 183: 105798.
  • 880. Booth, D.J., Beretta, G.A. 2021, Long-term demographics of a coral-reef fish: growth, survival and abundance at several spatial scales, Coral Reefs 40(4): 1257-1266.
  • 881. Braley, R.D. 2023, A population study of giant clams (Tridacninae) on the Great Barrier Reef over three-decades, Molluscan Research 43(2): 77-95.
  • 882. Sherman, C.C.D., Smith, T.M., York, P.H., Jarvis, J.C., Ruiz-Montoya, L. and Kendrick, G.A. 2018, Reproductive, dispersal and recruitment strategies in Australian seagrasses, in Seagrasses of Australia: Structure, Ecology and Conservation, eds A.W.D. Larkum, G.A. Kendrick and P.J. Ralph, Springer, Switzerland, pp. 213-256.
  • 883. Loffler, Z. 2019, The persistence of Sargassum communities on coral reefs: resilience and herbivory, PhD thesis, James Cook University.
  • 884. Hopley, D. and Smithers, S. 2019, Geomorphology of coral reefs with special reference to the Great Barrier Reef, in The Great Barrier Reef: Biology, Environment and Management, eds P. Hutchings, M.J. Kingsford and O. Hoegh-Guldberg, 2nd edn, CSIRO Publishing, Clayton, Australia, pp. 9–24.
  • 885. Goreau, T.F. 1963, Calcium carbonate deposition by coralline algae and corals in relation to their roles as reef‐builders, Annals of the New York Academy of Sciences 109(1): 127-167.
  • 886. Cohen, A.L. and Holcomb, M. 2009, Why corals care about ocean acidification: uncovering the mechanism, Oceanography 22(4): 118-127.
  • 887. Calhoun, R.S. and Field, M.E. 2008, Sand composition and transport history on a fringing coral reef, Molokai, Hawaii, Journal of Coastal Research 24(5): 1151-1160.
  • 888. Nelson, C.E., Wegley Kelly, L. and Haas, A.F. 2023, Microbial interactions with dissolved organic matter are central to coral reef ecosystem function and resilience, Annual Review of Marine Science 15: 431-460.
  • 889. Braga, J.C., Puga-Bernabéu, Á, Heindel, K., Patterson, M.A., Birgel, D., et al. 2019, Microbialites in last glacial maximum and deglacial reefs of the Great Barrier Reef (IODP Expedition 325, NE Australia), Palaeogeography, Palaeoclimatology, Palaeoecology 514: 1–17.
  • 890. Riding, R., Liang, L. and Braga, J.C. 2014, Millennial‐scale ocean acidification and late Quaternary decline of cryptic bacterial crusts in tropical reefs, Geobiology 12(5): 387-405.
  • 891. Mallela, J. and Fox, R.J. 2018, The role of parrotfishes in the destruction and construction of coral reefs, in Biology of parrotfishes, eds A.S. Hoey and R.M. Bonaldo, CRC Press, Boca Raton, pp. 161-196.
  • 892. Kenyon, T.M., Doropoulos, C., Wolfe, K., Webb, G.E., Dove, S., et al. 2023, Coral rubble dynamics in the Anthropocene and implications for reef recovery, Limnology and Oceanography 68(1): 110-147.
  • 893. Glynn, P.W. and Manzello, D.P. 2015, Bioerosion and Coral Reef Growth: A Dynamic Balance, in Coral Reefs in the Anthropocene, ed. C. Birkeland, Springer, Dordrecht, pp. 67–96.
  • 894. Hill, T.S. and Hoogenboom, M.O. 2022, The indirect effects of ocean acidification on corals and coral communities, Coral Reefs 41(6): 1557-1583.
  • 895. Dove, S.G., Brown, K.T., Van Den Heuvel, A., Chai, A. and Hoegh-Guldberg, O. 2020, Ocean warming and acidification uncouple calcification from calcifier biomass which accelerates coral reef decline, Communications Earth & Environment 1(1): 55.
  • 896. Falkowski, P.G., Dubinsky, Z., Muscatine, L. and Porter, J.W. 1984, Light and the bioenergetics of a symbiotic coral, Bioscience 34(11): 705-709.
  • 897. Gattuso, J., Frankignoulle, M., Bourge, I., Romaine, S. and Buddemeier, R.W. 1998, Effect of calcium carbonate saturation of seawater on coral calcification, Global and Planetary Change 18(1-2): 37-46.
  • 898. McMahon, A., Santos, I.R., Schulz, K.G., Scott, A., Silverman, J., et al. 2019, Coral reef calcification and production after the 2016 bleaching event at Lizard Island, Great Barrier Reef, Journal of Geophysical Research: Oceans 124(6): 4003-4016.
  • 899. Davis, K.L., McMahon, A., Kelaher, B., Shaw, E. and Santos, I.R. 2019, Fifty years of sporadic coral reef calcification estimates at One Tree Island, Great Barrier Reef: Is it enough to imply long term trends? Frontiers in Marine Science 6: 282.
  • 900. Bellwood, D.R., Brandl, S.J., McWilliam, M., Streit, R.P., Yan, H.F., et al. 2024, Studying functions on coral reefs: past perspectives, current conundrums, and future potential, Coral Reefs: 1-17.